畜群发展系统仿真模型的建立——黑龙江省奶牛业发展方案的研究

笔者在Lewis—Leslie结模型构的基础上,结合系统动力学思想方法,提出了分块矩阵模型。该模型除了可以研究种群结构外,还可以挂接各种投入产出信息,把生态结构模型发展成生态经济模型。本文用此模型对黑龙江省奶牛业的发展做系统仿真,提出了不同阶段的方案。     

LSU rDNA-BASED RFLP ASSAYS FOR DISCRIMINATING SPECIES AND STRAINS OF ALEXANDRIUM (DINOPHYCEAE)1

In a previous study large-subunit ribosomal RNA gene (LSU rDNA) sequences from the marine dinoflagellates Alexandrium tamarense (Lebour) Balech, A. catenella (Whedon et Kofoid) Balech, A. fundyense Balech, A. affine (Fukuyo et Inoue) Balech, A. minutum Halim, A. lusitanicum Balech, and A. andersoni Balech were compared to assess inter- and intraspecific relationships. Many cultures compared in that study contained more than one class of LSU rDNA. Sequencing pooled clones of rDNA from single cultures revealed length heterogeneities and sequence ambiguities. This complicated sequence comparisons because multiple rDNA clones from a single culture had to be sequenced individually to document the different classes of molecules present in that culture. A further complication remained as to whether or not the observed intraculture sequence variations were reliable genetic markers or were instead artifacts of the polymerase chain reaction (PCR) amplification, cloning, and/or sequencing methods employed. The goals of the present study were to test the accuracy of Alexandrium LSU rDNA sequences using restriction fragment-length polymorphism (RFLP) analysis and to devise RFLP-based assays for discriminating among representatives of that group. Computer-assisted examination of the sequences allowed us to identify a set of restriction enzymes that were predicted to reveal species, strain, and intraculture LSU rDNA heterogeneities. All groups identified by sequencing were revealed independently and repeatedly by RFLP analysis of PCR-amplified material. Five ambiguities and one length heterogeneity, each of which ascribes a unique group of Alexandrium species or strains, were confirmed by restriction digests. Observed intraculture LSU rDNA heterogeneities were not artifacts of cloning and sequencing but were instead a good representation of the spectrum of molecules amplified during PCR reactions. Intraculture LSU rDNA heterogeneities thus serve as unique genetic markers for particular strains of Alexandrium, particularly those of A. tamarense, A. catenella, and A. fundyense. However, some of these “signature heterogeneities” represented a smaller portion of PCR product than was expected given acquired sequences. Other deviations from predicted RFLP patterns included incomplete digestions and appearance of spurious products. These observations indicate that the diversity of sequences in PCR product pools were greater than that observed by cloning and sequencing. The RFLP tests described here are useful tools for characterizing Alexandrium LSU rDNA to define the evolutionary lineage of cultures and are applicable at a fraction of the time, cost, and labor required for sequencing.     

Heuristic optimization of the general life history problem: A novel approach

Summary The general life history problem concerns the optimal allocation of resources to growth, survival and reproduction. We analysed this problem for a perennial model organism that decides once each year to switch from growth to reproduction. As a fitness measure we used the Malthusian parameterr, which we calculated from the Euler-Lotka equation. Trade-offs were incorporated by assuming that fecundity is size dependent, so that increased fecundity could only be gained by devoting more time to growth and less time to reproduction. To calculate numerically the optimalr for different growth dynamics and mortality regimes, we used a simplified version of the simulated annealing method. The major differences among optimal life histories resulted from different accumulation patterns of intrinsic mortalities resulting from reproductive costs. If these mortalities were accumulated throughout life, i.e. if they were senescent, a bangbang strategy was optimal, in which there was a single switch from growth to reproduction: after the age at maturity all resources were allocated to reproduction. If reproductive costs did not carry over from year to year, i.e. if they were not senescent, the optimal resource allocation resulted in a graded switch strategy and growth became indeterminate. Our numerical approach brings two major advantages for solving optimization problems in life history theory. First, its implementation is very simple, even for complex models that are analytically intractable. Such intractability emerged in our model when we introduced reproductive costs representing an intrinsic mortality. Second, it is not a backward algorithm. This means that lifespan does not have to be fixed at the begining of the computation. Instead, lifespan itself is a trait that can evolve. We suggest that heuristic algorithms are good tools for solving complex optimality problems in life history theory, in particular questions concerning the evolution of lifespan and senescence.     

海洋围隔生态系中无机氮对浮游植物演替的影响

本文评述了１９９２年秋冬季在厦门进行的一次海洋围隔生态系实验的结果。实验重现了围隔水体连续富营养引发了甲藻赤潮的现象。间歇性的供给无机氮,不会影响浮游植物演替的顺序,但会导致甲藻赤潮出现时间长短和优势种的差异。实验结果还表明,演替过程对甲藻赤潮的形成起着重要的作用。而不同种属甲藻的生活习性和它们的自养能力使它们的生存能力存在差异。这是形成甲藻赤潮优势种的一个主要因素。甲藻赤潮的发生并不完全依靠水体中营养盐浓度的大小。     

晋西黄土区土地利用对降雨入渗产流模式和优先流分布的影响试验研究

黄土高原退耕还林(草)工程显著改变了河川径流过程,但其作用机制尚不明晰。选取晋西黄土区4种典型下垫面(20年和30年刺槐人工林地、草地、休耕地)分别开展连续3场模拟降雨试验,观测坡面入渗产流过程,并结合染色示踪和图像处理软件技术,分析土地利用类型对坡面降雨入渗产流模式和优先流分布的影响。结果表明：(1)累积入渗量和优先流发育程度均表现为刺槐林地>草地>休耕地,刺槐林地优先流对总入渗的贡献是草地和休耕地的2.5—4.5倍,但优先流贡献均不超过10%,仍以基质流入渗为主。(2)4种用地类型降雨入渗主要补给地表60—70cm土层,前期降雨均匀增加表层土壤含水率,而后期降雨补给深层土壤水分的空间变异性显著增强。(3)刺槐林地产流量及径流系数均显著小于草地和休耕地,且前期含水量对20年刺槐林地的影响较小,而显著影响草地和休耕地径流系数。(4)直径d<1mm的细根显著促进降雨入渗和优先流发育,而d>5mm的粗根与入渗量和基质流量呈显著负相关。较高的土壤初始含水率、容重和粘粒含量会抑制入渗和优先流的发生。研究说明不同土地利用类型将改变降雨入渗产流过程及土壤水运动形式。     

Modeling of protein loops by simulated annealing.

A method is presented to model loops of protein to be used in homology modeling of proteins. This method employs the ESAP program of Higo et al. (Higo, J., Collura, V., & Garnier, J., 1992, Biopolymers 32, 33-43) and is based on a fast Monte Carlo simulation and a simulated annealing algorithm. The method is tested on different loops or peptide segments from immunoglobulin, bovine pancreatic trypsin inhibitor, and bovine trypsin. The predicted structure is obtained from the ensemble average of the coordinates of the Monte Carlo simulation at 300 K, which exhibits the lowest internal energy. The starting conformation of the loop prior to modeling is chosen to be completely extended, and a closing harmonic potential is applied to N, CA, C, and O atoms of the terminal residues. A rigid geometry potential of Robson and Platt (1986, J. Mol. Biol. 188, 259-281) with a united atom representation is used. This we demonstrate to yield a loop structure with good hydrogen bonding and torsion angles in the allowed regions of the Ramachandran map. The average accuracy of the modeling evaluated on the eight modeled loops is 1 A root mean square deviation (rmsd) for the backbone atoms and 2.3 A rmsd for all heavy atoms.     

90d模拟失重大鼠动脉压力反射反应性的改变

本工作研究了90d模拟失重大鼠动脉压力反射反应性的改变。即以血管活性药物变动平均动脉压(MAP),并同时记录反射性心率(HR)变化,采用非线性曲线拟合方法,定量评价清醒大鼠的动脉压力反射反应性的特征参数的改变。同时还利用受体阻断实验,观察迷走和交感神经成分在压力反射活动中的贡献。结果表明:模拟失重大鼠MAP-HR反应曲线向右上方移位,心率低限坪值升高,血压调节范围变窄,静态工作点升高。当心得安阻断β受体后,悬吊组大鼠压力感受性心率反射的平均增益及心率反应范围均高于对照组,提示模拟失重大鼠反射活动中迷走作用增强。     

水稻叶片对模拟酸雨伤害的生理反应

水稻暴露于ｐＨ２．５～４．２的模拟酸雨中２个月后测定表明：叶片叶绿素含量下降,细胞液离子外渗率增加,气孔阻抗增高,蒸腾速率降低。不同叶位的水稻叶片对模拟酸雨的敏感性不同,杂交稻（汕优６３）对模拟酸雨的敏感性较粳稻（中粳８６４）高     

Structural analysis of the N- and C-termini in a peptide with consensus sequence.

We present a structural analysis of a peptide, the sequence of which includes amino acids that show preferences for specific positions near the N- and C-termini in protein helices. This peptide has the sequence ac-YMSEDELKAAEAAFKRHGVP-amide, which includes a strong version of an N-terminal Harper-Rose capping box structure as well as a Gly located close to the C-terminus designed to elucidate its role in C-terminal capping. The sequence of five residues at the middle is inserted to separate effects at the two ends via a helix-stabilizing linker. Application of a simulated annealing procedure using interproton distance constraints derived from 1H NOESY experiments in water reveals the presence of a C-terminal structure in this model. The C-terminus forms a folded back structure in a significant fraction of structures generated by the annealing, in most of which Gly assumes an alpha L conformation. This structure occurs within a highly flexible region of the molecule and hence is occupied only a fraction of the time.     

模拟失重对大鼠心肌力学与生物化学的影响

观察为期４周模拟失重对大鼠心肌收缩性能与收缩蛋白性质的影响,发现模拟失重大鼠左心室乳头肌等长收缩的力学特征发生下列变化：发展张力峰值降低２９％（Ｐ〈０．０１）;达到张力峰值的时间延长１０％（Ｐ〈０．０５）;舒张一半的时间缩短１１％,但未达到显著水平（Ｐ〉０．０５）。心肌力学参数的这些变化表明模拟失重使大鼠心肌收缩性能降低。进一步研究显示,模拟失重大鼠左室心肌肌原纤维Ｃａ＾２＋,Ｍｇ＾２＋－ＡＴＰ酶